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9RXO

Structure of the PDZ2 domain from human PDZK1 (NHERF3) with the C-terminal residues (KSTQF) of human URAT1 transporter (SLC22A12)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-1
Synchrotron siteESRF
BeamlineID23-1
Temperature [K]100
Detector technologyPIXEL
Collection date2023-05-23
DetectorDECTRIS EIGER2 X CdTe 16M
Wavelength(s)0.95373
Spacegroup nameP 21 21 21
Unit cell lengths32.618, 39.105, 137.795
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution34.450 - 1.200
R-factor0.1675
Rwork0.166
R-free0.20350
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.009
RMSD bond angle1.037
Data reduction softwareautoPROC
Data scaling softwareSTARANISO (2.4.9)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.21_5207)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]35.0001.240
High resolution limit [Å]1.2001.200
Rmerge0.0851.415
Rpim0.0280.479
Number of reflections490762304
<I/σ(I)>12.12.1
Completeness [%]94.1
Redundancy10.1
CC(1/2)0.9920.562
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP29326% PEG 1500

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PDB entries from 2026-01-14

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