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9Q5Y

Human prolyl endopeptidase (PREP) - complex with YX45

This is a non-PDB format compatible entry.
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS-II BEAMLINE 17-ID-1
Synchrotron siteNSLS-II
Beamline17-ID-1
Temperature [K]100
Detector technologyPIXEL
Collection date2024-05-25
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.9201
Spacegroup nameP 1 21 1
Unit cell lengths106.220, 66.877, 156.909
Unit cell angles90.00, 99.29, 90.00
Refinement procedure
Resolution34.940 - 1.490
Rwork0.163
R-free0.20650
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.015
RMSD bond angle2.316
Data reduction softwareautoPROC
Data scaling softwareautoPROC
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0430 (refmacat 0.4.100))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]34.9401.530
High resolution limit [Å]1.4901.490
Rmerge0.0710.768
Rmeas0.0840.913
Rpim0.0440.488
Number of reflections26071313037
<I/σ(I)>9.91.5
Completeness [%]95.068.1
Redundancy3.53.4
CC(1/2)1.0000.540
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.527725-30% PEG 3350, 200 mM KSCN and 100 mM bis-tris propane pH 7.5

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