9NR2
Crystal structure of H5 hemagglutinin from the influenza virus A/black swan/Akita/1/2016 with LSTa
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-1 |
Synchrotron site | SSRL |
Beamline | BL12-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-12-17 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 187.241, 100.397, 132.067 |
Unit cell angles | 90.00, 125.93, 90.00 |
Refinement procedure
Resolution | 35.650 - 2.710 |
R-factor | 0.2258 |
Rwork | 0.223 |
R-free | 0.27200 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.486 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.21.2_5419: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 35.650 | 2.760 |
High resolution limit [Å] | 2.710 | 2.710 |
Rmeas | 0.240 | 1.500 |
Rpim | 0.100 | 0.630 |
Number of reflections | 52384 | 5206 |
<I/σ(I)> | 13.2 | |
Completeness [%] | 97.7 | |
Redundancy | 6.2 | |
CC(1/2) | 0.980 | 0.630 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.2M sodium iodide, 20% PEG 3350 |