9NFQ

Crystal structure of CRBN-DDB1 and MRT-3486 in complex with NEK7

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	EMBL/DESY, HAMBURG BEAMLINE X13
Synchrotron site	EMBL/DESY, HAMBURG
Beamline	X13
Temperature [K]	100
Detector technology	PIXEL
Collection date	2023-05-06
Detector	DECTRIS EIGER X 16M
Wavelength(s)	0.95372
Spacegroup name	P 21 2 21
Unit cell lengths	118.579, 121.857, 144.737
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	46.610 - 3.250
R-factor	0.2141
Rwork	0.212
R-free	0.26110
Structure solution method	MOLECULAR REPLACEMENT
RMSD bond length	0.011
RMSD bond angle	1.309
Data reduction software	DIALS
Data scaling software	STARANISO
Phasing software	PHASER
Refinement software	PHENIX (dev_5430)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	46.610	3.400
High resolution limit [Å]	3.250	3.250
Rmerge	0.236
Number of reflections	24342	1478
<I/σ(I)>	7.3
Completeness [%]	94.3
Redundancy	13.1
CC(1/2)	0.995	0.612

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP		293	0.029 M HEPES salt, 0.071 M MOPS acid, 0.06 M NaNO3, 0.06 M Na2HPO4, 0.06 M (NH4)2SO4, 11 % (w/v) PEG 8,000 and 25 % (v/v) ethylene glycol.