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9LO7

The crystal structure of PDE4D with 2317b

This is a non-PDB format compatible entry.
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU
Temperature [K]100
Detector technologyPIXEL
Collection date2025-01-06
DetectorRIGAKU HyPix-3000
Wavelength(s)1.5418
Spacegroup nameP 21 21 21
Unit cell lengths57.348, 79.685, 162.299
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution22.467 - 2.200
R-factor0.227479941172
Rwork0.224
R-free0.29345
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5wqa
RMSD bond length0.008
RMSD bond angle0.949
Data reduction softwareCrysalisPro (171.39.46)
Refinement softwareREFMAC (V8)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]22.4702.300
High resolution limit [Å]2.2002.200
Rmerge0.1490.368
Number of reflections377733820
<I/σ(I)>13.93
Completeness [%]97.9100
Redundancy4.34.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2770.1 M HEPES (pH 7.4), 0.1 M MgCl2, 12-15% PEG3350, 10% isopropanol, and 25% ethylene glycol

236620

PDB entries from 2025-05-28

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