9JV8
Crystal structure of M. tuberculosis EccCb1-D2 domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | BRUKER TURBO X-RAY SOURCE |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-05-04 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 37.389, 75.642, 102.524 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.050 - 2.200 |
R-factor | 0.1819 |
Rwork | 0.177 |
R-free | 0.22850 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.009 |
Data reduction software | HKL-3000 (2.3.10) |
Data scaling software | SCALEPACK (2.3.10) |
Phasing software | PHASER (1.20.1-4487) |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 35.000 | 35.000 | 2.280 |
High resolution limit [Å] | 2.200 | 4.740 | 2.200 |
Rmerge | 0.089 | 0.052 | 0.245 |
Rmeas | 0.092 | 0.054 | 0.255 |
Rpim | 0.025 | 0.015 | 0.070 |
Number of reflections | 15346 | 1665 | 1428 |
<I/σ(I)> | 14.5 | ||
Completeness [%] | 99.5 | 99.6 | 95.6 |
Redundancy | 13.9 | 13.2 | 13.2 |
CC(1/2) | 0.990 | 0.999 | 0.986 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 277 | 0.1M Sodium citrate tribasic dihydrate pH 5.6, 20% (v/v) PEG 4000 and 20% (v/v) 2-Propanol |