9J4N
Crystal structure of E. coli Leucine tRNA with UAG anticodon
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2023-04-13 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 61.365, 114.179, 53.817 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.681 - 2.900 |
R-factor | 0.24762 |
Rwork | 0.246 |
R-free | 0.26961 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 |
RMSD bond angle | 1.680 |
Data reduction software | autoPROC |
Data scaling software | STARANISO |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0425) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.681 | 3.331 |
High resolution limit [Å] | 2.897 | 2.897 |
Rmerge | 0.191 | 1.750 |
Rmeas | 0.200 | 1.821 |
Rpim | 0.059 | 0.498 |
Number of reflections | 4225 | 352 |
<I/σ(I)> | 11.1 | 1.8 |
Completeness [%] | 86.8 | 61.7 |
Redundancy | 11.5 | 13.2 |
CC(1/2) | 0.997 | 0.626 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 297 | 0.25 M ammonium sulfate, 0.1 M sodium acetate trihydrate, pH 4.6, 32% (w/v) polyethylene glycol monomethyl ether 2000 |