9IM4
Crystal Structure of AF9 YEATS domain F28R mutant in complex with histone H3K9la
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-12-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 83.081, 83.081, 116.259 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 30.591 - 2.794 |
R-factor | 0.2711 |
Rwork | 0.266 |
R-free | 0.31500 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.093 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | PHENIX ((1.14_3247: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.850 |
High resolution limit [Å] | 2.790 | 7.590 | 2.800 |
Rmerge | 0.131 | 0.057 | 0.516 |
Rmeas | 0.137 | 0.060 | 0.543 |
Rpim | 0.039 | 0.020 | 0.162 |
Number of reflections | 11943 | 657 | 580 |
<I/σ(I)> | 6.6 | ||
Completeness [%] | 99.7 | 98.1 | 99 |
Redundancy | 11.2 | 9.2 | 8.1 |
CC(1/2) | 0.989 | 0.998 | 0.982 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | 2.1M DL Malic acid pH7.0 |