Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9HOY

Variant P417G of Orotidine 5'-monophosphate decarboxylase-domain of human UMPS in complex with the product UMP at 1.2 Angstrom resolution

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP13 (MX1)
Temperature [K]100
Detector technologyPIXEL
Collection date2023-06-12
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9763
Spacegroup nameC 2 2 21
Unit cell lengths76.780, 119.300, 61.850
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.670 - 1.200
R-factor0.1331
Rwork0.132
R-free0.14980
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.009
RMSD bond angle1.097
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwarePHENIX ((1.20.1_4487: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.6701.243
High resolution limit [Å]1.2001.200
Rmeas0.087
Number of reflections887028755
<I/σ(I)>15.34
Completeness [%]99.9
Redundancy13.3
CC(1/2)0.9990.741
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293100 mM Tris/HCl pH 7.0, 1.7 - 1.9 M Ammonium sulfate, 10 mM Glutathion pH 8.0, 5% (w/v) Glycerol

255615

PDB entries from 2026-06-24

PDB statisticsPDBj update infoContact PDBjnumon