9GKV
Crystal Structure of Deacetylase (HdaH) from Vibrio cholerae in complex with SAHA
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | BESSY BEAMLINE 14.1 |
| Synchrotron site | BESSY |
| Beamline | 14.1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2024-04-04 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.9184 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 50.920, 81.530, 133.170 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 47.607 - 1.900 |
| Rwork | 0.175 |
| R-free | 0.24030 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.012 |
| RMSD bond angle | 2.090 |
| Data reduction software | XDS (30.06.2023) |
| Data scaling software | XDS (30.06.2023) |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0419) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 47.607 | 1.940 |
| High resolution limit [Å] | 1.900 | 1.900 |
| Rmerge | 0.105 | 0.756 |
| Rmeas | 0.110 | 0.825 |
| Rpim | 0.318 | |
| Number of reflections | 43149 | 2264 |
| <I/σ(I)> | 12.7 | 1.7 |
| Completeness [%] | 96.9 | 81.1 |
| Redundancy | 11.3 | 5.9 |
| CC(1/2) | 0.999 | 0.911 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 1.4 M sodium acetate 0.1 M MES pH 6.5 |
