Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9GBF

X-RAY structure of PHDvC5HCH tandem domain of NSD2

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06SA
Synchrotron siteSLS
BeamlineX06SA
Temperature [K]100
Detector technologyPIXEL
Collection date2018-07-05
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.998
Spacegroup nameP 1 21 1
Unit cell lengths36.131, 45.249, 60.646
Unit cell angles90.00, 99.65, 90.00
Refinement procedure
Resolution4.970 - 1.760
R-factor0.1918
Rwork0.188
R-free0.22810
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.019
RMSD bond angle1.607
Data reduction softwareXDS
Data scaling softwareSTARANISO
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]36.0001.773
High resolution limit [Å]1.6011.601
Number of reflections17296865
<I/σ(I)>9.7
Completeness [%]87.3
Redundancy3.3
CC(1/2)0.9970.483
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP277.1528% PEG Smear Medium, 0.1M HEPES, pH 7.5, 0.05M magnesium sulfate

238895

PDB entries from 2025-07-16

PDB statisticsPDBj update infoContact PDBjnumon