Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9FD7

Re-engineered peroxygenase variant of 2-deoxy-D-ribose-5-phosphate aldolase in substrate-free state

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE MASSIF-1
Synchrotron siteESRF
BeamlineMASSIF-1
Temperature [K]100
Detector technologyPIXEL
Collection date2022-04-14
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9655
Spacegroup nameP 1 21 1
Unit cell lengths48.173, 72.752, 70.919
Unit cell angles90.00, 96.19, 90.00
Refinement procedure
Resolution50.680 - 1.400
R-factor0.13502
Rwork0.134
R-free0.15708
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.009
RMSD bond angle1.678
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0425)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]72.7501.420
High resolution limit [Å]1.4001.400
Rmerge0.0590.796
Rmeas0.0640.875
Rpim0.0250.354
Total number of observations60488520006
Number of reflections914233626
<I/σ(I)>16.92.2
Completeness [%]95.7
Redundancy6.65.5
CC(1/2)0.9990.746
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION293Protein was concentrated to 8 mg/mL in 20 mM potassium phosphate, pH 7. Crystallization conditions: 0-4% 2-propanol, 22-24% PEG 3350 in 0.1 M HEPES, pH 7.5.

237735

PDB entries from 2025-06-18

PDB statisticsPDBj update infoContact PDBjnumon