9FD7
Re-engineered peroxygenase variant of 2-deoxy-D-ribose-5-phosphate aldolase in substrate-free state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-1 |
Synchrotron site | ESRF |
Beamline | MASSIF-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-04-14 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9655 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 48.173, 72.752, 70.919 |
Unit cell angles | 90.00, 96.19, 90.00 |
Refinement procedure
Resolution | 50.680 - 1.400 |
R-factor | 0.13502 |
Rwork | 0.134 |
R-free | 0.15708 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.678 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0425) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 72.750 | 1.420 |
High resolution limit [Å] | 1.400 | 1.400 |
Rmerge | 0.059 | 0.796 |
Rmeas | 0.064 | 0.875 |
Rpim | 0.025 | 0.354 |
Total number of observations | 604885 | 20006 |
Number of reflections | 91423 | 3626 |
<I/σ(I)> | 16.9 | 2.2 |
Completeness [%] | 95.7 | |
Redundancy | 6.6 | 5.5 |
CC(1/2) | 0.999 | 0.746 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | Protein was concentrated to 8 mg/mL in 20 mM potassium phosphate, pH 7. Crystallization conditions: 0-4% 2-propanol, 22-24% PEG 3350 in 0.1 M HEPES, pH 7.5. |