9EMD
Crystal structure of Histidine acetyltransferase with L-histidine and coenzyme A disulfide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-10-09 |
Detector | DECTRIS EIGER2 X CdTe 16M |
Wavelength(s) | 0.976 |
Spacegroup name | P 63 |
Unit cell lengths | 90.495, 90.495, 98.634 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 78.370 - 1.600 |
R-factor | 0.1675 |
Rwork | 0.167 |
R-free | 0.18530 |
Structure solution method | SIRAS |
RMSD bond length | 0.006 |
RMSD bond angle | 0.994 |
Data reduction software | XDS (Jan 31, 2020) |
Data scaling software | XSCALE (Jan 31, 2020) |
Phasing software | SHELXCD (C: 2016/1, D:2013/2) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 78.400 | 1.700 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmeas | 0.063 | 3.020 |
Number of reflections | 60369 | 9763 |
<I/σ(I)> | 21.9 | 0.92 |
Completeness [%] | 99.9 | 100 |
Redundancy | 14 | 13.9 |
CC(1/2) | 1.000 | 0.495 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | Sample buffer: 10 mM Tris-HCl pH 7.5, 150 mM NaCl, 10% glycerol, 1 mM L-Histidine, 0.7 mM CoA. Well buffer: 0.1 M MIB buffer pH 7.0, 25 % w/v PEG 1500. Cryo-solution: 60% well solution, 20% Glycerol, 20% PEG 1500 |