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9EHB

Structure of short Lettuce aptamer (C14T variant) bound with TO1-biotin.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS-II BEAMLINE 17-ID-1
Synchrotron siteNSLS-II
Beamline17-ID-1
Temperature [K]100
Detector technologyPIXEL
Collection date2024-08-09
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.92
Spacegroup nameP 21 21 21
Unit cell lengths25.179, 44.690, 120.288
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.070 - 2.030
R-factor0.2352
Rwork0.233
R-free0.28210
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.010
RMSD bond angle1.210
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0702.060
High resolution limit [Å]2.0302.030
Number of reflections9274462
<I/σ(I)>5.6
Completeness [%]99.4
Redundancy5.9
CC(1/2)0.9970.350
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP298100 uM annealed DNA (in 20 mM MOPS KOH pH 7.0, 150 mM KCl, 1 mM MgCl2 and 10 uM EDTA) was mixed with equimolar chromophore and mixed with crystallization buffer solution (1 M magnesium chloride hexahydrate, 2 M HEPES pH 7.5 and PEG MME 550) and crystallized against 300 uL crystallization buffer and 300 uL water mixture.

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PDB entries from 2026-06-10

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