9E6Y
Structure of CD112 (Nectin-2) domain 1 bound to CD112R (PVRIG)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 298 |
Detector technology | PIXEL |
Collection date | 2022-10-12 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 79.650, 79.650, 81.380 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.240 - 2.200 |
R-factor | 0.2096 |
Rwork | 0.208 |
R-free | 0.24540 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.561 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 36.240 | 2.279 |
High resolution limit [Å] | 2.200 | 2.200 |
Number of reflections | 13826 | 1362 |
<I/σ(I)> | 17.6 | |
Completeness [%] | 99.9 | |
Redundancy | 19.57 | |
CC(1/2) | 0.999 | 0.645 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9.5 | 298 | 0.1M CHES PH 9.5, 20% W/V PEG 8000 |