9DP1
APE1 N174A Substrate Complex with Abasic DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2021-10-08 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.00 |
Spacegroup name | P 1 |
Unit cell lengths | 43.943, 60.498, 73.075 |
Unit cell angles | 81.81, 75.60, 88.73 |
Refinement procedure
Resolution | 25.060 - 2.290 |
R-factor | 0.2312 |
Rwork | 0.230 |
R-free | 0.25060 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.012 |
RMSD bond angle | 1.705 |
Data reduction software | XDS |
Data scaling software | HKL-3000 (705c) |
Phasing software | PHENIX (1.19.2-4158-000) |
Refinement software | PHENIX ((1.19.2_4158: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.060 | 2.340 |
High resolution limit [Å] | 2.290 | 2.290 |
Rmeas | 0.133 | 0.215 |
Number of reflections | 29791 | 1460 |
<I/σ(I)> | 7.6 | 4.39 |
Completeness [%] | 96.6 | 97.3 |
Redundancy | 2.5 | 2.6 |
CC(1/2) | 0.915 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 100 mM sodium citrate, pH 5.0, 200 mM magnesium chloride, 16-21% PEG20000 |