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9AYT

Structure of the quorum quenching lactonase GcL bound to N-hexanoyl-L-homoserine lactone

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-B
Synchrotron siteAPS
Beamline23-ID-B
Temperature [K]100
Detector technologyPIXEL
Collection date2016-11-04
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.033199
Spacegroup nameH 3
Unit cell lengths108.500, 108.500, 228.500
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution76.170 - 2.100
R-factor0.19358
Rwork0.192
R-free0.22039
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.004
RMSD bond angle0.687
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareREFMAC
Refinement softwareREFMAC (5.8.0425)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]76.1702.200
High resolution limit [Å]2.1002.100
Number of reflections584547610
<I/σ(I)>9.752.33
Completeness [%]99.8
Redundancy6.25
CC(1/2)0.9960.853
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2921.0 - 1.25 M ammonium sulfate and 0.1 M sodium acetate pH 4.0 - 5.5

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PDB entries from 2026-01-21

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