9C1Q

Crystal structure of the WDR domain of human DCAF1 in complex with OICR-39512 compound

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	APS BEAMLINE 24-ID-E
Synchrotron site	APS
Beamline	24-ID-E
Temperature [K]	100
Detector technology	PIXEL
Collection date	2023-02-11
Detector	DECTRIS EIGER X 16M
Wavelength(s)	0.97918
Spacegroup name	P 61 2 2
Unit cell lengths	82.340, 82.340, 233.617
Unit cell angles	90.00, 90.00, 120.00

Refinement procedure

Resolution	45.220 - 1.800
R-factor	0.15759
Rwork	0.157
R-free	0.19136
Structure solution method	MOLECULAR REPLACEMENT
RMSD bond length	0.006
RMSD bond angle	1.271
Data scaling software	HKL-3000
Phasing software	PHASER
Refinement software	REFMAC (5.8.0425)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	50.000	50.000	1.830
High resolution limit [Å]	1.800	4.880	1.800
Rmerge	0.063	0.025	0.950
Rmeas	0.065	0.026	0.985
Rpim	0.018	0.007	0.258
Number of reflections	44430	2530	2169
<I/σ(I)>	6.3
Completeness [%]	99.9	99.8	99.9
Redundancy	13.7	12	14.3
CC(1/2)	1.000	1.000	0.871

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP		291	20% PEG3350, 0.2 M Magnesium formate