8ZK7
Crystal structure of the Decarboxylase KDC4427 mutant E468L from Enterobacter sp. CGMCC 5087
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL10U2 |
Synchrotron site | SSRF |
Beamline | BL10U2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2024-03-24 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 116.604, 137.054, 77.488 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 68.530 - 2.320 |
R-factor | 0.205 |
Rwork | 0.203 |
R-free | 0.24740 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.006 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 68.580 | 2.380 |
High resolution limit [Å] | 2.320 | 2.320 |
Rmerge | 0.216 | 1.254 |
Rmeas | 0.235 | 1.364 |
Rpim | 0.093 | 0.530 |
Total number of observations | 349686 | 26216 |
Number of reflections | 54533 | 3991 |
<I/σ(I)> | 4.7 | 1.5 |
Completeness [%] | 100.0 | |
Redundancy | 6.4 | 6.6 |
CC(1/2) | 0.985 | 0.767 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.1M calcium acetate, 0.1M sodium MES, pH 6.0, 13% PEG 400 |