8Z02
CoA bound to human GTP-specific succinyl-CoA synthetase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-18 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 56.630, 105.700, 126.770 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.781 - 2.320 |
R-factor | 0.2143 |
Rwork | 0.212 |
R-free | 0.24900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5cae |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.781 | 48.780 | 2.400 |
High resolution limit [Å] | 2.320 | 8.990 | 2.320 |
Rmerge | 0.210 | 0.042 | 1.176 |
Rmeas | 0.224 | 0.046 | 1.249 |
Rpim | 0.077 | 0.016 | 0.408 |
Total number of observations | 4901 | 29940 | |
Number of reflections | 33736 | 678 | 3249 |
<I/σ(I)> | 9.7 | 26.9 | 2.2 |
Completeness [%] | 99.9 | 99.3 | 99.9 |
Redundancy | 8.9 | 7.2 | 9.2 |
CC(1/2) | 0.990 | 0.998 | 0.707 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291.15 | 0.1 M HEPES pH 7, 15% w/v PEG 20000 |