8YM6
Structure of Caspase-8/cFLIP death effector domain assembly
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE BL13B1 |
Synchrotron site | NSRRC |
Beamline | BL13B1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-02-19 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 150.311, 158.640, 353.286 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.640 - 3.300 |
R-factor | 0.2207 |
Rwork | 0.218 |
R-free | 0.26430 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.562 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 3.420 |
High resolution limit [Å] | 3.300 | 7.080 | 3.300 |
Rmerge | 0.093 | 0.034 | 0.739 |
Rmeas | 0.041 | 0.903 | |
Rpim | 0.022 | 0.510 | |
Number of reflections | 61626 | 6004 | 5962 |
<I/σ(I)> | 12.757 | ||
Completeness [%] | 96.8 | 90.4 | 94.8 |
Redundancy | 3.3 | 3.4 | 2.8 |
CC(1/2) | 0.998 | 0.775 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | 0.1 M HEPES pH 7.5, 0.2 M Lithium chloride, 20 % PEG 400, 0.1 M TBG pH 9.0 |