8Y07
Crystal structure of LbCas12a in complex with crRNA and 13nt target DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-03-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97915 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 121.664, 142.668, 202.687 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.050 - 2.850 |
R-factor | 0.2117 |
Rwork | 0.209 |
R-free | 0.26410 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5xuz |
RMSD bond length | 0.011 |
RMSD bond angle | 1.365 |
Data reduction software | HKL-3000 (7.21) |
Data scaling software | HKL-3000 (7.21) |
Phasing software | PHENIX (1.17.1_3660) |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.900 |
High resolution limit [Å] | 2.850 | 2.850 |
Rpim | 0.072 | 0.270 |
Number of reflections | 82713 | 4097 |
<I/σ(I)> | 12 | 3 |
Completeness [%] | 100.0 | 100 |
Redundancy | 11.6 | 10.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 289 | 0.2 M Li2SO4, 30 mM Na2HPO4, 43.75 mM citric acid, 13% PEG 1000 |