8XWC
Crystal structure of human 8-oxoguanine glycosylase K249H mutant bound to the substrate 8-oxoguanine DNA at pH 8.0 under 277 K
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-05-20 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 61.808, 69.544, 87.955 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.980 - 1.450 |
R-factor | 0.1553 |
Rwork | 0.154 |
R-free | 0.17860 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.016 |
RMSD bond angle | 1.547 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.200 | 1.470 |
High resolution limit [Å] | 1.450 | 1.450 |
Number of reflections | 67334 | 3039 |
<I/σ(I)> | 35.6 | |
Completeness [%] | 99.2 | |
Redundancy | 6 | |
CC(1/2) | 1.000 | 0.967 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 277 | Sodium cacodylate, MgCl2, PEG 4000, glycerol |