8XUD
Crystal structure of adaptor NlpI in complex with endopeptidase MepS and PDZ-protease Prc
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE TPS 05A |
Synchrotron site | NSRRC |
Beamline | TPS 05A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2022-11-07 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 230.410, 230.410, 182.905 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.910 - 3.490 |
R-factor | 0.2358 |
Rwork | 0.235 |
R-free | 0.27180 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.585 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 3.620 |
High resolution limit [Å] | 3.490 | 3.490 |
Rpim | 0.048 | 0.414 |
Number of reflections | 61469 | 6097 |
<I/σ(I)> | 19.76 | |
Completeness [%] | 97.4 | 99.1 |
Redundancy | 7.6 | 6.8 |
CC(1/2) | 0.996 | 0.806 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 8% (w/v) PEG 4000, 1M sodium acetate pH 4.6 |