8XC4
Nipah virus attachment glycoprotein head domain in complex with a broadly neutralizing antibody 1E5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL02U1 |
Synchrotron site | SSRF |
Beamline | BL02U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-09-13 |
Detector | DECTRIS EIGER2 S 9M |
Wavelength(s) | 0.9789 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 193.422, 193.422, 198.111 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.690 - 3.240 |
R-factor | 0.219 |
Rwork | 0.218 |
R-free | 0.24680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6vy5 |
RMSD bond length | 0.005 |
RMSD bond angle | 1.109 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.18.2_3874: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.320 |
High resolution limit [Å] | 3.240 | 3.240 |
Rmerge | 0.189 | 0.189 |
Number of reflections | 58116 | 58116 |
<I/σ(I)> | 9.57 | |
Completeness [%] | 97.1 | |
Redundancy | 6.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 289 | 1.5 M ammonium sulfate, 0.1 M sodium acetate trihydrate pH4.6 |