8X46
Crystal structure of DIMT1 in complex with adenosylornithine (SFG) from Pyrococcus horikoshii
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2022-05-16 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 119.150, 80.340, 84.110 |
Unit cell angles | 90.00, 115.46, 90.00 |
Refinement procedure
Resolution | 64.450 - 2.200 |
R-factor | 0.21535 |
Rwork | 0.213 |
R-free | 0.26103 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.420 |
Data reduction software | MOSFLM (7.4.0) |
Data scaling software | Aimless (0.7.13) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0352) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 75.940 | 2.270 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.111 | 0.554 |
Rmeas | 0.126 | 0.633 |
Rpim | 0.059 | 0.302 |
Total number of observations | 161859 | 13702 |
Number of reflections | 36508 | 3157 |
<I/σ(I)> | 6.3 | 2 |
Completeness [%] | 100.0 | |
Redundancy | 4.4 | 4.3 |
CC(1/2) | 0.994 | 0.866 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 6.5 | 293 | 0.2 M Zinc Acetate Dihydrate, 0.1 M Sodium Cacodylate Trihydrate pH 6.5, 18% (w/v) PEG 8000 |