8WWZ
Crystal structure of Bacillus subtilis glyceraldehyde-3-phosphate dehydrogenase GapB
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 11C |
Synchrotron site | PAL/PLS |
Beamline | 11C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-07-07 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 62 2 2 |
Unit cell lengths | 102.600, 102.600, 111.081 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 88.850 - 2.300 |
R-factor | 0.1963 |
Rwork | 0.194 |
R-free | 0.25100 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.674 |
Data reduction software | MOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.19rc5_4047: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 88.850 | 2.380 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.143 | 0.776 |
Rmeas | 0.143 | 0.797 |
Rpim | 0.033 | 0.181 |
Number of reflections | 15937 | 1519 |
<I/σ(I)> | 16 | |
Completeness [%] | 100.0 | 100 |
Redundancy | 19 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 6.5 | 293 | 13.4% (v/v) PEG 400, 10.05% (w/v) PEG 1000, 0.15M Potassium phosphate dibasic/Sodium phosphate monobasic pH 6.5 |