8WFP
Crystal structure of polo-like kinase(PLK1)PBD in complex with DD-1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-10-22 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1 |
Spacegroup name | P 1 2 1 |
Unit cell lengths | 77.829, 35.370, 95.545 |
Unit cell angles | 90.00, 89.98, 90.00 |
Refinement procedure
Resolution | 35.370 - 1.990 |
R-factor | 0.1995 |
Rwork | 0.198 |
R-free | 0.22850 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4o9w |
RMSD bond length | 0.014 |
RMSD bond angle | 2.166 |
Data reduction software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 35.370 | 4.790 |
High resolution limit [Å] | 1.990 | 1.990 |
Number of reflections | 35270 | 35270 |
<I/σ(I)> | 17.5 | |
Completeness [%] | 96.6 | |
Redundancy | 4 | |
CC(1/2) | 0.995 | 0.995 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 5% PEG 3350, 10% Tacsimate pH 8.0 |