8VU9
Crystal structure of wild-type HIV-1 reverse transcriptase in complex with non-nucleoside inhibitor 5i3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-28 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0332 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 163.039, 72.424, 109.000 |
Unit cell angles | 90.00, 100.06, 90.00 |
Refinement procedure
Resolution | 43.190 - 1.990 |
R-factor | 0.2019 |
Rwork | 0.201 |
R-free | 0.24400 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.047 |
Data reduction software | HKL-2000 (721.4) |
Data scaling software | HKL-2000 (721.4) |
Phasing software | PHENIX (1.19.2_4158) |
Refinement software | PHENIX (1.21.2_5419) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.190 | 2.070 |
High resolution limit [Å] | 1.990 | 1.990 |
Rmeas | 0.096 | 0.986 |
Rpim | 0.021 | 0.373 |
Number of reflections | 84381 | 7563 |
<I/σ(I)> | 20 | 1.25 |
Completeness [%] | 98.7 | |
Redundancy | 17.6 | |
CC(1/2) | 0.992 | 0.187 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 10% (v/v) poly(ethylene glycol) (PEG) 8000, 4% (v/v) PEG 400, 100 mM MES, pH 6.3, 10 mM spermine, 15 mM MgSO4, 100 mM ammonium sulfate, and 5 mM tris(2-carboxyethyl)phosphine |