Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8VFF

Binary DNA Polymerase Beta bound to DNA containing primer terminal FapydG base-paired with a dA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyPIXEL
Collection date2020-01-15
DetectorDECTRIS PILATUS3 R 200K-A
Wavelength(s)1.54
Spacegroup nameP 1 21 1
Unit cell lengths54.399, 79.277, 54.885
Unit cell angles90.00, 105.53, 90.00
Refinement procedure
Resolution23.640 - 1.690
R-factor0.2156
Rwork0.215
R-free0.23190
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.010
RMSD bond angle1.251
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]25.0001.730
High resolution limit [Å]1.6901.690
Number of reflections435902102
<I/σ(I)>17.5
Completeness [%]93.4
Redundancy1.8
CC(1/2)0.9980.431
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP29114-22% PEG 3350 0.05 M Imidazole pH 8.0 0.35 M Sodium Acetate

221371

PDB entries from 2024-06-19

PDB statisticsPDBj update infoContact PDBjnumon