8VDT
DNA Ligase 1 with nick DNA 3'rA:T
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-11-28 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 64.170, 115.342, 125.002 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 24.830 - 2.780 |
R-factor | 0.207 |
Rwork | 0.203 |
R-free | 0.24900 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.582 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 24.830 | 2.850 |
High resolution limit [Å] | 2.780 | 2.780 |
Rpim | 0.042 | 0.378 |
Number of reflections | 23397 | 1162 |
<I/σ(I)> | 14.9 | |
Completeness [%] | 98.5 | 99.7 |
Redundancy | 6.1 | |
CC(1/2) | 0.995 | 0.803 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.4 | 298.5 | 100mM MES, pH 6.4, 100mM Lithium Acetate, 12 w/vPEG 3350 |