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8VDT

DNA Ligase 1 with nick DNA 3'rA:T

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2022-11-28
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.000
Spacegroup nameP 21 21 21
Unit cell lengths64.170, 115.342, 125.002
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution24.830 - 2.780
R-factor0.207
Rwork0.203
R-free0.24900
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.003
RMSD bond angle0.582
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]24.8302.850
High resolution limit [Å]2.7802.780
Rpim0.0420.378
Number of reflections233971162
<I/σ(I)>14.9
Completeness [%]98.599.7
Redundancy6.1
CC(1/2)0.9950.803
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.4298.5100mM MES, pH 6.4, 100mM Lithium Acetate, 12 w/vPEG 3350

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PDB entries from 2024-11-06

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