Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8V58

Complex of murine cathepsin K with bound heparan sulfate 12mer

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2020-11-06
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.0
Spacegroup nameP 41 2 2
Unit cell lengths111.892, 111.892, 116.653
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution19.870 - 3.100
R-factor0.2386
Rwork0.236
R-free0.29260
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.009
RMSD bond angle1.298
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0003.150
High resolution limit [Å]3.1003.100
Rmeas0.0991.030
Rpim0.0360.361
Number of reflections13901675
<I/σ(I)>5.41.7
Completeness [%]98.8
Redundancy7.4
CC(1/2)0.9800.875
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP52930.1M sodium acetate, 0.2M lithium sulfate, 31.5% PEG 8K

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon