8UOW
Structure of atypical asparaginase from Rhodospirillum rubrum (mutant Y21A)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-04-18 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 71.831, 77.119, 114.845 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.800 - 1.600 |
R-factor | 0.18738 |
Rwork | 0.186 |
R-free | 0.22131 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.013 |
RMSD bond angle | 1.874 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 40.000 | 1.630 |
High resolution limit [Å] | 1.600 | 4.340 | 1.600 |
Rmerge | 0.051 | 0.047 | 0.326 |
Rmeas | 0.057 | 0.053 | 0.367 |
Rpim | 0.025 | 0.024 | 0.164 |
Total number of observations | 393729 | ||
Number of reflections | 84496 | 4467 | 4101 |
<I/σ(I)> | 23.3 | ||
Completeness [%] | 98.5 | 97.2 | 97.3 |
Redundancy | 4.7 | 4.4 | 4.6 |
CC(1/2) | 0.991 | 0.994 | 0.948 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 uL 16 mg/mL protein in 50 mM HEPES, pH 7, 150 mM sodium chloride + 0.2 uL reservoir (Molecular Dimensions Morpheus III F8) |