8UKW
Crystal structure the extracellular region of the epidermal growth factor receptor variant III (EGFRvIII) at pH 5.0
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-04-10 |
Detector | MAR CCD 300 mm |
Wavelength(s) | 1.0332 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 48.818, 88.294, 99.751 |
Unit cell angles | 90.00, 95.25, 90.00 |
Refinement procedure
Resolution | 45.330 - 2.390 |
R-factor | 0.2163 |
Rwork | 0.215 |
R-free | 0.24360 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.812 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.610 | 2.480 |
High resolution limit [Å] | 2.390 | 2.390 |
Rmerge | 0.066 | 0.705 |
Rmeas | 0.079 | 0.835 |
Rpim | 0.042 | 0.443 |
Total number of observations | 115842 | 12278 |
Number of reflections | 33254 | 3486 |
<I/σ(I)> | 11.7 | 1.8 |
Completeness [%] | 99.3 | |
Redundancy | 3.5 | 3.5 |
CC(1/2) | 0.998 | 0.796 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | 7 mg/ml protein, 27.5% PEG 3350, 50 mM Na Citrate pH 5.0 |