8U6G
Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 3-(2-(2-(3-acryloyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)ethoxy)-4-chlorophenoxy)-5-chlorobenzonitrile (JLJ744), a non-nucleoside inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-11-09 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.9201 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 224.206, 68.746, 104.123 |
Unit cell angles | 90.00, 107.42, 90.00 |
Refinement procedure
Resolution | 99.300 - 2.770 |
R-factor | 0.21542 |
Rwork | 0.213 |
R-free | 0.26998 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 1.429 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0405) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 99.300 | 2.823 |
High resolution limit [Å] | 2.770 | 2.770 |
Rmerge | 0.094 | 2.497 |
Rmeas | 0.111 | 2.923 |
Rpim | 0.059 | 1.513 |
Number of reflections | 38419 | 1901 |
<I/σ(I)> | 9.8 | |
Completeness [%] | 99.4 | 99.4 |
Redundancy | 6.8 | |
CC(1/2) | 0.996 | 0.332 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.8 | 277 | 50 mM Imidazole pH 6.8, 14% PEG 8000, 100 mM ammonium sulfate, 15 mM magnesium sulfate, and 5 mM spermine |