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8U4U

Crystal structure of 53BP1 tandem Tudor domain homodimer engineered with two disulfide bridges

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-BM
Synchrotron siteAPS
Beamline19-BM
Temperature [K]100
Detector technologyCCD
Collection date2019-02-15
DetectorADSC QUANTUM 315r
Wavelength(s)0.9794
Spacegroup nameP 21 21 21
Unit cell lengths72.500, 161.825, 179.947
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.190 - 3.790
R-factor0.2513
Rwork0.246
R-free0.29970
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.002
RMSD bond angle0.404
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0003.926
High resolution limit [Å]3.7903.790
Rmerge0.1200.614
Rmeas0.1310.680
Rpim0.0520.284
Number of reflections195411631
<I/σ(I)>15.73.23
Completeness [%]89.4
Redundancy5.7
CC(1/2)0.9960.813
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293Crystals of the protein (15 mg/mL) were obtained by the hanging drop vapor diffusion method, mixing 1 microliter of the sample in 50 mM Tris-HCl, pH 7.0, 100 mM NaCl and 1 microliter of the reservoir solution (0.1 M Bis-Tris, pH 6.5) at 293 K. The crystals were cryoprotected with 25% (w/v) xylitol

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PDB entries from 2024-11-20

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