8U4U
Crystal structure of 53BP1 tandem Tudor domain homodimer engineered with two disulfide bridges
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-BM |
Synchrotron site | APS |
Beamline | 19-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-02-15 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9794 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 72.500, 161.825, 179.947 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.190 - 3.790 |
R-factor | 0.2513 |
Rwork | 0.246 |
R-free | 0.29970 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.404 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.926 |
High resolution limit [Å] | 3.790 | 3.790 |
Rmerge | 0.120 | 0.614 |
Rmeas | 0.131 | 0.680 |
Rpim | 0.052 | 0.284 |
Number of reflections | 19541 | 1631 |
<I/σ(I)> | 15.7 | 3.23 |
Completeness [%] | 89.4 | |
Redundancy | 5.7 | |
CC(1/2) | 0.996 | 0.813 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | Crystals of the protein (15 mg/mL) were obtained by the hanging drop vapor diffusion method, mixing 1 microliter of the sample in 50 mM Tris-HCl, pH 7.0, 100 mM NaCl and 1 microliter of the reservoir solution (0.1 M Bis-Tris, pH 6.5) at 293 K. The crystals were cryoprotected with 25% (w/v) xylitol |