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8TYV

Crystal structure of the SPX domain of XPR1 in complex with IP8

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-BM
Synchrotron siteAPS
Beamline22-BM
Temperature [K]100
Detector technologyCCD
Collection date2019-06-07
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)1
Spacegroup nameP 1 21 1
Unit cell lengths56.712, 47.754, 70.373
Unit cell angles90.00, 104.21, 90.00
Refinement procedure
Resolution36.050 - 1.850
R-factor0.2376
Rwork0.236
R-free0.27050
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.012
RMSD bond angle1.922
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareREFMAC
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.880
High resolution limit [Å]1.8505.0201.850
Rmerge0.0470.0320.611
Rmeas0.0500.0350.670
Rpim0.0180.0130.268
Total number of observations225578
Number of reflections3087615481310
<I/σ(I)>15.4
Completeness [%]98.293.885.1
Redundancy7.37.15.5
CC(1/2)0.9990.9990.827
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2982mM IP8 soaked into crystals grown under 6% PEG 3350, 30% Ethylene Glycol, 0.1 M Sodium Citrate, 0.1 M MgCl2, pH 6.0 for 3 Days

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PDB entries from 2024-08-07

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