8TM0
Preclinical Characterization of Pan-NKG2D Ligand-Binding NKG2D Receptor Decoys
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-04-08 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97741 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 56.083, 68.354, 140.040 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 70.020 - 3.830 |
R-factor | 0.27392 |
Rwork | 0.269 |
R-free | 0.36180 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.360 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 70.020 | 50.000 | 4.070 |
High resolution limit [Å] | 3.830 | 10.820 | 4.000 |
Rmerge | 0.050 | 0.722 | |
Rmeas | 0.061 | 0.870 | |
Rpim | 0.035 | 0.476 | |
Number of reflections | 4537 | 242 | 231 |
<I/σ(I)> | 10.8 | ||
Completeness [%] | 86.3 | 77.6 | 88.2 |
Redundancy | 2.8 | 2.8 | 2.7 |
CC(1/2) | 0.758 | 0.993 | 0.758 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | HEPES (pH 7.0), Jeffamine ED-2001 |