8TIC
Structure of human beta 1,3-N-acetylglucosaminyltransferase 2 with compound 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-05-11 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 89.142, 92.394, 203.432 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.980 - 2.700 |
R-factor | 0.2145 |
Rwork | 0.212 |
R-free | 0.26600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7jhk |
RMSD bond length | 0.004 |
RMSD bond angle | 0.665 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.980 | 2.790 |
High resolution limit [Å] | 2.700 | 2.700 |
Rmerge | 0.392 | 2.503 |
Rmeas | 0.415 | 2.639 |
Rpim | 0.132 | 0.822 |
Number of reflections | 46965 | 4559 |
<I/σ(I)> | 6.2 | 1.1 |
Completeness [%] | 99.9 | 100 |
Redundancy | 9.6 | 10 |
CC(1/2) | 0.979 | 0.328 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 277 | 0.17 M sodium acetate, 0.08 M Tris pH 8.5, 25.5% PEG 4000, 15% glycerol |