8T5P
SARS-CoV-2 ORF3a peptide in complex with TRAF3 TRAF domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-03-28 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.033 |
Spacegroup name | P 1 |
Unit cell lengths | 82.350, 83.750, 83.800 |
Unit cell angles | 60.03, 79.26, 83.80 |
Refinement procedure
Resolution | 41.770 - 2.500 |
R-factor | 0.1991 |
Rwork | 0.197 |
R-free | 0.24240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ghu |
RMSD bond length | 0.008 |
RMSD bond angle | 0.925 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.770 | 2.560 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmeas | 0.174 | 2.329 |
Rpim | 0.065 | 0.928 |
Number of reflections | 64645 | 4608 |
<I/σ(I)> | 11.11 | 1.72 |
Completeness [%] | 97.5 | 94.3 |
Redundancy | 7.1 | 6.3 |
CC(1/2) | 0.996 | 0.505 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293.15 | 13% PEG3350, 0.1 M Tris, pH 8.0, 0.25 M ammonium sulfate |