8T52
HIV-1 Integrase Catalytic Core Domain (CCD) F185H/Y99H/A128T Mutant Complexed with EKC-110
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-12-16 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.5418 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 72.243, 72.243, 66.423 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 31.730 - 2.070 |
R-factor | 0.2688 |
Rwork | 0.264 |
R-free | 0.31410 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 8d3s |
RMSD bond length | 0.003 |
RMSD bond angle | 0.611 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 31.730 | 2.149 |
High resolution limit [Å] | 2.070 | 2.070 |
Rmerge | 0.029 | 0.591 |
Rmeas | 0.041 | 0.836 |
Rpim | 0.029 | 0.591 |
Number of reflections | 11041 | 284 |
<I/σ(I)> | 28.93 | 0.98 |
Completeness [%] | 87.2 | 22.95 |
Redundancy | 1.9 | 1.3 |
CC(1/2) | 0.999 | 0.365 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | 0.1 M (NH4)2SO4, 0.1 M sodium cacodylate (pH = 6.5), 10% PEG 8000, 5 mM DTT |