8SXR
Crystal structure of SARS-CoV-2 Mpro with C5a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08B1-1 |
Synchrotron site | CLSI |
Beamline | 08B1-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-03-09 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.1807 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.607, 99.110, 102.655 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.060 - 2.114 |
R-factor | 0.2031 |
Rwork | 0.199 |
R-free | 0.25185 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 8ds2 |
RMSD bond length | 0.006 |
RMSD bond angle | 1.436 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0405) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.060 | 2.320 |
High resolution limit [Å] | 2.114 | 2.114 |
Number of reflections | 27119 | 1356 |
<I/σ(I)> | 11.241 | 1.49 |
Completeness [%] | 67.5 | 0.1413 |
Redundancy | 6.51 | |
CC(1/2) | 0.997 | 0.454 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1 M Tris pH 8, 15 % PEG 8000, 10 % ethylene glycol |