8SWU
Structure of Clostridium perfringens PNP bound to transition state analog IMMUCILLIN H and sulfate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-2 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-06-24 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.98 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 72.433, 91.824, 78.409 |
Unit cell angles | 90.00, 112.70, 90.00 |
Refinement procedure
Resolution | 19.870 - 2.340 |
R-factor | 0.2324 |
Rwork | 0.231 |
R-free | 0.26440 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.568 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.19.1_4122: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.870 | 2.430 |
High resolution limit [Å] | 2.340 | 2.340 |
Rmerge | 0.204 | 0.756 |
Rmeas | 0.217 | 0.806 |
Rpim | 0.073 | 0.272 |
Total number of observations | 338175 | 32293 |
Number of reflections | 39636 | 3923 |
<I/σ(I)> | 8.7 | 3.1 |
Completeness [%] | 99.2 | |
Redundancy | 8.5 | 8.2 |
CC(1/2) | 0.992 | 0.821 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 3.5 | 292 | 25% (w/v) PEG 3,350 and 0.1 M tri-Sodium citrate |