8SJ8
Structure of binary complex of human cGAS and bound ppp(2'-5')GpG
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-03-09 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 47.766, 59.584, 124.750 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.980 - 2.500 |
R-factor | 0.2197 |
Rwork | 0.214 |
R-free | 0.27110 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4k8v |
RMSD bond length | 0.009 |
RMSD bond angle | 1.095 |
Data reduction software | XDS (20210205) |
Data scaling software | Aimless (0.7.7) |
Phasing software | MOLREP (11.7.03) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 28.980 | 2.600 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.063 | 0.171 |
Rmeas | 0.069 | 0.187 |
Rpim | 0.028 | 0.075 |
Total number of observations | 8463 | |
Number of reflections | 23430 | 1413 |
<I/σ(I)> | 17.6 | 8.1 |
Completeness [%] | 98.8 | |
Redundancy | 5.8 | 6 |
CC(1/2) | 0.998 | 0.982 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 298.15 | 5mM magnesium chloride, 0.1M Tris-HCl pH8.5, and 8% (w/v) PEG8000 |