8SDF
Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody CC25.4
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-07-17 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0332 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 58.204, 142.996, 82.928 |
Unit cell angles | 90.00, 94.13, 90.00 |
Refinement procedure
Resolution | 58.050 - 1.790 |
R-factor | 0.1872 |
Rwork | 0.185 |
R-free | 0.21840 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.090 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.19.2_4158: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 82.713 | 1.818 |
High resolution limit [Å] | 1.790 | 1.790 |
Number of reflections | 126496 | 6298 |
<I/σ(I)> | 9.8 | |
Completeness [%] | 99.2 | |
Redundancy | 7 | |
CC(1/2) | 0.998 | 0.356 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 65% MPD and 0.1 M Bicine pH 9.0 |