8SC7
Structure of EGFR in complex with MTX-531
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-1 |
Synchrotron site | ESRF |
Beamline | MASSIF-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-10-29 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.965459 |
Spacegroup name | I 2 3 |
Unit cell lengths | 145.517, 145.517, 145.517 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.299 - 1.984 |
Rwork | 0.186 |
R-free | 0.21560 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.005 |
RMSD bond angle | 1.315 |
Data reduction software | XDS (Jan 10, 2022) |
Data scaling software | Aimless (0.7.9) |
Phasing software | REFMAC (5.8.0352) |
Refinement software | REFMAC (5.8.0352) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 34.299 | 34.299 | 2.080 |
High resolution limit [Å] | 1.984 | 4.376 | 1.984 |
Rmerge | 0.087 | 0.039 | 3.326 |
Rmeas | 0.089 | 0.040 | 3.368 |
Rpim | 0.014 | 0.006 | 0.534 |
Total number of observations | 1364986 | 121027 | 135367 |
Number of reflections | 34279 | 3416 | 3420 |
<I/σ(I)> | 29.54 | 94.16 | 1.45 |
Completeness [%] | 96.6 | 100 | 74.1 |
Completeness (spherical) [%] | 96.6 | 100.0 | 74.1 |
Completeness (ellipsoidal) [%] | 96.6 | 100.0 | 74.1 |
Redundancy | 39.82 | 35.43 | 39.58 |
CC(1/2) | 1.000 | 0.999 | 0.588 |
Anomalous completeness (spherical) | 96.6 | 100.0 | 74.5 |
Anomalous completeness | 96.6 | 100.0 | 74.5 |
Anomalous redundancy | 20.5 | 19.0 | 20.1 |
CC(ano) | -0.372 | -0.396 | -0.010 |
|DANO|/σ(DANO) | 0.7 | 0.8 | 0.8 |
Diffraction limits | Principal axes of ellipsoid fitted to diffraction cut-off surface |
1.984 Å | 1.000, 1.000, 1.000 |
1.984 Å | 0.000, 0.000, 0.000 |
1.984 Å | 0.000, 0.000, 0.000 |
Criteria used in determination of diffraction limits | local <I/sigmaI> ≥ 1.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 285 | 1.05 M Sodium Succinate pH 7.0, 0.1 M HEPES-NaOH pH 6.7 |