8S9Q
HIV-1 Integrase Catalytic Core Domain (CCD) F185H Mutant Complexed with STP03-0404
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-12-22 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.514 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 71.991, 71.991, 65.920 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 31.590 - 2.260 |
R-factor | 0.2588 |
Rwork | 0.255 |
R-free | 0.29310 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6nuj |
RMSD bond length | 0.002 |
RMSD bond angle | 0.399 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 31.590 | 2.341 |
High resolution limit [Å] | 2.260 | 2.260 |
Rmeas | 0.294 | |
Rpim | 0.059 | 0.532 |
Number of reflections | 9580 | 941 |
<I/σ(I)> | 8.67 | 0.82 |
Completeness [%] | 99.9 | 100 |
Redundancy | 20 | 14.3 |
CC(1/2) | 0.997 | 0.506 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | 0.1 M (NH4)2SO4, 0.1 M sodium cacodylate (pH = 6.5), 10% PEG 8000, 5 mM DTT |