8S84
KOD-H4 DNA polymerase mutant in a ternary complex with DNA/DNA and non-hydrolyzable triphosphate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-10-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.976 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 110.970, 152.462, 70.125 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.580 - 2.350 |
R-factor | 0.2383 |
Rwork | 0.237 |
R-free | 0.27550 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.628 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((dev_4788: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.796 | 2.490 |
High resolution limit [Å] | 2.350 | 2.350 |
Number of reflections | 95588 | 15411 |
<I/σ(I)> | 3.75 | |
Completeness [%] | 99.4 | |
Redundancy | 3 | |
CC(1/2) | 0.985 | 0.100 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | Morpheus II condition A1: 36 % v/v of a 72% mix: 30% w/v PEG 3000, 40% v/v 1, 2, 4-Butanetriol, 2% w/v NDSB 256; 0.03 M Lithium sulfate, 0.03 M Sodium sulfate, 0.03 Potassium sulfate, 0.1 M MOPSO/Bis-Tris pH 6.5 |