8RYH
Desulfovibrio desulfuricans [FeFe]-hydrogenase variant with both subunits linked by a linker peptide derived from a group A1 type [FeFe]-hydrogenase of Veillonella atypica
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, DESY BEAMLINE P11 |
Synchrotron site | PETRA III, DESY |
Beamline | P11 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-08-28 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 1.033 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 106.118, 50.603, 86.643 |
Unit cell angles | 90.00, 105.33, 90.00 |
Refinement procedure
Resolution | 45.402 - 1.773 |
Rwork | 0.205 |
R-free | 0.24610 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.861 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0425) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.402 | 45.360 | 1.810 |
High resolution limit [Å] | 1.770 | 9.040 | 1.770 |
Rmerge | 0.159 | 0.054 | 1.058 |
Rmeas | 0.187 | 0.064 | 1.242 |
Rpim | 0.098 | 0.034 | 0.646 |
Number of reflections | 41648 | 361 | 1379 |
<I/σ(I)> | 8.9 | 26.4 | 2.3 |
Completeness [%] | 96.4 | 99.4 | 55.8 |
Redundancy | 6.9 | 6.3 | 7 |
CC(1/2) | 0.996 | 0.995 | 0.726 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.6 | 293 | 1 M Lithium chloride, 0.1 M Sodium acetate, 25 % Polyethylene glycol 4000 |