Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8RI5

Crystal structure of transplatin/B-DNA adduct obtained upon 48 h of soaking

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsELETTRA BEAMLINE 11.2C
Synchrotron siteELETTRA
Beamline11.2C
Temperature [K]100
Detector technologyPIXEL
Collection date2023-10-04
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.00
Spacegroup nameP 21 21 21
Unit cell lengths25.474, 40.221, 65.676
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution25.450 - 1.415
Rwork0.190
R-free0.22950
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.011
RMSD bond angle3.199
Data reduction softwareautoPROC
Data scaling softwareautoPROC
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0352)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]25.4701.450
High resolution limit [Å]1.4101.410
Number of reflections12070490
<I/σ(I)>30.52.5
Completeness [%]89.951.9
Redundancy104.8
CC(1/2)0.9990.832
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.52937-14% (v/v) 2-methyl-2,4-pentanediol (MPD), 20 mM MgCl2, 80 mM spermine tetrahydrochloride, and 60 mM sodium cacodylate pH 6.5

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon